-
Here are the first round reviews from the Diagnostics manuscript as an itemized list and the full text:
- [ ] Reviewer 1.1 --> #1173
- [ ] Reviewer 1.2 (this is a long one, we could split it up)
…
-
from sars-cov-2-variants/lineage-proposals#955
HK.3.2> C10039T> C7765T, T21333C, G22973C(S:E471Q), C25782T
Query: T21333, G22973C(2 dropped out)
Query from dropped out sequences: G13627A, T2133…
-
Title: Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host
# General Information
## Please paste a link to the paper or a citation here:
Link: https://www.nejm.org/doi/full…
-
Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1814
KP.2 > C9286T,C14919T, S:S31del
Query:del21653, C9286T,C14919T
No. of seqs: 67
[usher](https://nextstrain.org/…
-
Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1814
KP.2+C832T+Orf1a:V28I,S:S31del
Query: T14700C ,C832T, C897A
No. of seqs: 65
[usher](https://nextstrain.org/fet…
-
Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…
-
Hawaii is experiencing a surge in cases, with KP.3 at 30% of samples collected after May 15 it is very likely that it is the main driver of this new wave.
About 1/3 of KP.3 samples belong to a local …
-
Aim:
Production grade library for pathogen phylodynamics
Ideas:
* XMl wrappers for safe model building in BEAST
* bacterial phylodynamics module:
* species specific configurations / workf…
-
I'd like to see how to generate mutation and lineage reports using only *.vcf as an input. The commercial lab that provides our county wastewater sequencing services provides a *.vcf , but doesn't pro…
-
The existing [SARS-CoV-2 variant analysis] tutorial is focused on the analysis of metagenomic sequencing data. The majority of data being produced, however, uses the ARTIC amplicon protocol (for Illum…