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### Description of the bug
I was trying to run the test data set using `test_full_data.config` and got an error saying there was a missing required column in SDRF file. It needs a `characteristics[bi…
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Hi @ycheng517, thanks for your efforts in adding the gripper! I just thought I'd post my findings when testing this on the AR4-MK2
First, it was not working at all for but I eventually figured out …
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When I try to run the map step of my pipeline, I keep getting errors that prevent the merged.bam file from being created. The error seems to be different for each run, e.g.,
`Data length wrong dl = 6…
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### Description of the bug
Hi, thanks for the all useful docs and work so far!
I am currently trying to run DIA data through quantms. We are primarily interested in Phosphoproteomics but I would …
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Hello! I was hoping we could discuss why the lookup of a modification is using the 'NT' name when an unimod accession is available. It sincerely feels like the human readable name should be a fallback…
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One color and two color experiments will be the same "platform" in GEO or ArrayExpress -- there should be some metadata field that indicates whether a second channel is present
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### Project short name:
PressureInducedHypertrophicHeart
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1z8r…
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Hi All,
I'm trying to run `parse_sdrf convert-openms` on my SDRF file, but I'm getting an error that I don't fully understand, particularly since the validation tool doesn't indicate any obvious is…
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Hi,
I am trying to run the [nf-core/quantms pipeline](https://nf-co.re/quantms/1.1.1) which uses your program (v4.2.0) on the [PXD041434](https://www.ebi.ac.uk/pride/archive/projects/PXD041434) dat…
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### Description of the bug
When running the DIA workflow, the dia_convert give the following error if Uniprot Trembl is used:
```
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:DIA:DIANNCONVERT (…