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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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### Description of feature
Hi,
we are storing our sequencing data in spring-format to reduce disc space. Do you plan to support spring-format besides fastq for sequencing reads in the near future?
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Hi,
I'm running merqury to access assembly completeness by comparing the k-mer library of PCR-free Illumina reads and polished and unpolished versions of the assembly. However, for some Illumina k-me…
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There is PDX data, though no RNASeq, availalbe from Orcestra.ca: https://www.orcestra.ca/xevaset/10.5281/zenodo.4302463
Is it useful to have pdx data that is not sequencing?
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CNVkit is a best python package to infer copy number information from high-throughput sequencing data
Actually, We are very excited to find that you have provided new function within the software pac…
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I am working on a CRISPR data treated by two sgRNAs and sequenced with targeted sequencing. The distance between the two sgRNA is 3000bp which is much longer than amplicon. The targeted area is the w…
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Dear developer,
I would like to ask whether Xron can be used for base-calling of RNA-sequencing data obtained from RNA004 direct RNA-Seq runs. Data are either *.fast5 or *.pod5.
Thanks and best
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The evidence and provenance CQs [here](https://docs.google.com/spreadsheets/d/1HSqXaGgT--wBH4jnCMQy5fasw-0hoGq2p-Pp5kxJ2Jg/edit#gid=902191065) (rows 16-20 specifically) highlight the need to capture m…
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Hi
Thanks for a great method.
I'm working on chromosome contact data generated from a long read sequencing method. Check link here if interested:
https://www.biorxiv.org/content/10.1101/833590v1…
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Dear bcbio community,
In 2011, the Harvard Chan Bioinformatics Core began developing bcbio as an open-source framework to tackle challenges in reproducibility and scalability in the field of next-g…