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Right now, the TRUE or FALSE variant screening results for trio analysis include parent-child inheritance checks, as well as other criteria that make a variant suspicious. However, for followup analys…
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### Description of the bug
Viralrecon has worked perfectly for our SCV2 and some hybrid capture protocols (with the metagenomic side). However, when I ran the pipeline by passing a custom bed file an…
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Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…
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Created a clean Project, study and link file , transform, load went fine, annotations failed. This was working fine before applying the stats fix changes.
2019-02-22 11:44:09 [main] INFO VariantH…
wbari updated
5 years ago
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http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/VCF%20(Variant%20Call%20Format)%20version%204.0/encoding-structural-variants
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Lirical requires Exomiser variant database to run analysis with VCF file, but there are multiple variant database releases out there. We need a way to check that LIRICAL will work with a given databas…
ielis updated
5 months ago
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When I try to load the checkpoint about the N-Caltech101, it occurs the following error:
```
raise RuntimeError('Error(s) in loading state_dict for {}:\n\t{}'.format(
RuntimeError: Error(s) in lo…
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prepare-exomiser-batch bugs
Ive created a local branch that fixes or implements the features listed below
- poetry install failure **Error**
- Was an issue regarding lxml (4.9.2) not suppor…
AO33 updated
2 months ago
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At the moment we have "Global variant zygosity count" which is non-germline samples
We can support multiple ones, we just only have 1 at the moment
Need to work out what people would like to split b…