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Hello!
I use long read RNA seq via the new branch “long-reads" to annotate a certain mammalian genome.
https://github.com/Gaius-Augustus/BRAKER/blob/master/docs/long_reads/long_read_protocol.md
W…
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### Description of feature
Hi.
I am using the nf-core rnaseq pipeline, version 3.12.0.
Since you pointed out that the transcriptome and GTF files in iGenomes are vastly out of date [here](https:/…
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Hi,
I'm using GALBA for annotating a genome assembly for a pig.
I used the following command line to execute GALBA and the whole process was finished without any critical error.
`galba.pl --genome=…
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Hello,
I've been working my way through each step in the pipeline and have encountered an error when running STAARpipeline_Gene_Centric_Coding.r
The error occurs in the internal `coding` functio…
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Hello, FLAMES aligns my reads to the reference genome but during realignment I get this error:
```
### skip aligning reads to genome 2023-12-07 15:57:35
### read gene annotation 2023-12-07 15:57:…
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I am working on a project that utilizes BRAKER to annotate recently assembled genomes for wild plant species. During the course of the process, we became concerned that stringent RepeatMasking may res…
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LinkML: https://biodatamodels.github.io/ontology-associations/PombasePhafAssociation/
Docs: https://www.pombase.org/downloads/phenotype-annotations
Data download (I assume this is best, would be…
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### Description of the bug
Hi,
I try to build the references as follow ;
```
nextflow run ${IDIR}/rnafusion/main.nf \
--build_references \
--starfusion --fusioncatcher --arriba \
-pr…
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This is related to the GBCR (and was a question at my departmental talk last week!)
When will we reach sustainability (i.e will be able to add data to the database immediately as it is published).…
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Hi, thank you for sharing us this great pipeline! I wonder if there any solution for fetching all the images needed before executing the pipeline?
I've tried with `nf-core download` (which may not…
lam-c updated
6 months ago