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I am running different assemblies using different numbers of SMRT cells with hifiasm v0.13 on ccs hifi reads (corrected reads in fastq).
The sequences generated from homozygote diploid wheat
I have …
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## Expected Behavior
The search should work as easy-search for the protein sequence fasta file
## Current Behavior
Only easy-search is working for the protein sequence fasta file
## Steps to …
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Per discussion https://github.com/livecomsjournal/journal_information/pull/61 and https://github.com/livecomsjournal/journal_information/issues/1#issuecomment-351789242 we should remove the "About" pa…
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Hi MMseqs2 team,
I am completely new to MMseqs2 and simply want to taxonomically classify a few (30 max.) amino acid sequences that I retrieved from my pipeline. For this, I want to use the Uniref9…
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Hi, thanks for this fast and easy-to-run aligner :) I have two questions.
1. How the "coverage" in the report was calculated? I had a coverage value 0.95 from a human GRCh38 to human T2T alignme…
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I am trying to run HG-CoLoR for error correction of PacBio reads with 10x Linked-Reads (short reads). I installed QuorUM with bioconda. I got this error when running HG-CoLoR:
----- QuorUM -----
…
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Hi,
After setting up and indexing the databases locally (as described on colabfold.mmseqs.com) on our HPC, I am running into trouble when trying to execute the colabfold_search.sh script. Despite …
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Hello. As I told you before I have some problmes with Sameday Lockers integrations in the checkout page using One Page Checkout module from PrestaHero.com.
1. The Show map button is visible only afte…
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Hi Kamil and folks,
Thanks for creating this clever method to examine genome structure using k-mers and releasing the new beta version for us to test out. I'm hoping to get some feedback on how to …
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Hello,
I am trying to run the m6a model with a reference assembly I generated using flye. However, I'm getting this error:
python3 /data/opt/programs/etc/mCaller/mCaller-1.0.3/mCaller.py -t 24…