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The chloroExtractor [terminates with exit status 1 if the input dataset is too small](https://github.com/chloroExtractorTeam/chloroExtractor/blob/ce5ffbdd202be9a21c28df576bae1bd8c41f7d88/bin/scale_rea…
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# 1. Purpose
The nomenclature creation pipeline will generate a nomenclature from a collection of (cg/wg)MLST allelic profiles. Will make use of .
# 2. Input
## 2.1. Allelic profiles
The m…
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For the record, I have run some Wave tests where, following the upgrade of the container build system, I am having errors accessing files stored under `/var`. Two examples from the same test with Spac…
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### Description of the bug
I am attempting to run Nanoseq on some direct RNA-seq data with the following command, and get the ensuing error regarding Nanoplot. The rest of the pipeline seems to work …
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### Description of the bug
with `-r 1.11.0`
No extension fails as expected
```
ERROR ~ ERROR: Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The followi…
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New discussion posts should receive an automatic reply telling them that nextflow github discussions are being phased out in favor of Seqera Community:
https://community.seqera.io/
Should also w…
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# 1. Purpose
The purpose of this pipeline is to query for genomes within a certain threshold of a collection of genomes.
# 2. Input
## 2.1. Query profiles
The input will consist of cg/wgML…
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**Description :**
Long read sequences are failing in the demix step if the sequence id in the bed file is not matching with the reference.
**Sample name**: SRR21595278.fastq.gz
**Bed file**: http…
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### Description of feature
When running smrnaseq with technical repeats I get the error:
```
Process `NFCORE_SMRNASEQ:SMRNASEQ:MIRNA_QUANT:MIRTOP_QUANT` input file name collision -- There are…