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### Description of the bug
Perhaps fasta needs to be a "required" parameter, that is, perhaps the pipeline should fail immediately if the fasta paramenter isn't set to an (existing) fasta-file?
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## Bug report
### Expected behavior and actual behavior
Some HPC clusters have machines siloed into specific queues. Some users have access to multiple such queues. In order to efficiently make…
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I think it could be helpful to call out breaking changes more visibly in the change log.
E.g., you changed the default behaviour of rolling trace/report numbers that caused things to break without …
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### BioProject Checklist:
---------------
- [x] PRJNA549565
- [x] PRJNA357091
- [x] PRJNA507638
- [x] PRJNA505541
- [x] PRJNA480546
- [x] PRJNA480110
- [x] PRJNA419119
- [x] PRJNA374502
- [x…
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Dear Poseidon team,
I have a question about -profile selection. I am trying to run example file called "bats_mx1_small.fasta" on a HPC using Singularity but also running nextflow via miniconda envi…
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Hi, I might an error in Process: GAP:KRAKEN_SWF:KRAKEN2_BUILD (1).
```
ERROR~ Error executing process > 'GAP:KRAKEN_SWF:KRAKEN2_BUILD (1)'
Caused by:
Process `GAP:KRAKEN_SWF:KRAKEN2_BUILD (1)`…
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## Check Documentation
I have checked the following places for your error:
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core/nanoseq pipeline doc…
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Hi,
I'm using the nanopore dehosting nextflow/conda pipeline. Cmd below:
nextflow run phac-nml/ncov-dehoster -profile conda --nanopore --minimap2 --fastq_directory $1 --human_ref $2 --human_minima…
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Hi again,
I have another question, is there a way to retain the reads that map to each reference taxon? I have looked at the various options for output-type and do not see the option to output the …
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## Bug report
There's a chance I'm doing something boneheaded here, but I am trying to pull the latest seqera-labs AWS batch docker images from `public.ecr.aws/seqera-labs/nextflow:latest` from an…