-
Show "# germline homozygous" in gene and variant level pages.
- In the **gene level page**, show "# germline homozygous" column in the table between "% Prevalence" and "Cancer type" columns. This d…
cband updated
3 years ago
-
Some key germline variants may also play a role in tumor initial, progression or evolution. Does revolver accept a mixture of germline variants and somatic mutations as input data? Is this meaningful?…
-
I am a student who started my internship at graduate school and is building a new server.
I'm going to install bcbio according to the link recommended by the professor, but I run into the same prob…
-
I modified the example command to use the hg19 genome as shown;
```
create_report \
examples/variants/variants.vcf.gz \
https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/hg19.fa…
-
Hi,
WHile running freebayes i see the below error message. I am not using any variant_regions file in the sample.yaml file.
[2021-03-25T05:10Z] ERROR(freebayes): Target region coordinates (chrY…
-
I treat data and fgbio and umi-tools, and called variant with vardict, umi-tools get 8 times variants thanumi-tools, is there any inner reason, they both dealed with R1 and R2 umis
#
thanks a lot
-
In the vcf file is the genotype always set to 1 no matter the value for VAF_CORR= as long as the allele frequency is above the threshold of 1%?
-
**Describe the issue**
I am encountering an error during the segmentation step when running PureCN. I can finish running PureCN when using the CNVkit coverage and segmentation files, but when I tried…
-
**Is your feature request related to a problem? Please describe.**
Mutect2 occasionally filters PASSed and real somatic variants as clustered_events. A plot for each VCF file containing distribution …
-
Meeting room link to follow on email.
Agenda items and discussion topics are welcome!
- New features
- Bug debriefings
- New developers
- Reports from pipeline development
- Progress on server…