-
we'd like a new endpoint to submit `kir` sequence data
- the service should take in
- feature name
- locus
- gene system `kir`
- sequence
and create a sequence
-
I ran `mhcflurry-predict --list-supported-alleles > 'supported_alleles.txt'` to get a list of of alleles supported for mhcflurry.
I noted HLA-A*02:172, HLA-C*02:16, and HLA-C12:139 were not in tha…
-
Hello,
I was trying to reproduce the result of the paper following as much as possible the different steps and my results are very similar to the paper, using my own method. One thing that is surpri…
-
Vaxrank fails when it tries to find the contig 'chr14_GL000194v1_random' in the reference GRCh38, despite this being a valid contig name.
**Command run:**
vaxrank
--vcf /home/ubuntu/data/Sample…
-
hi,
when i use the -a option it only types A,B,C,DQA1,DRB1. if i specify -a MICA for instance, i get the message "Input bam : A DOES NOT exist. Please check the bam exists." I know the MICA reads are…
-
It seems like karyoploteR is computing coverage in a different way than IGV.
I think that IGV is ignoring the reads that have pairs mapping outside the viewing region. In contrast, karyoploteR is i…
-
This is a feature request.
It would be great if STAR would support dynamic masking for an already built genome index.
This feature would be useful especially in calling fusions, where the genes …
-
Hi, cliu32
so sorry to boring you again.
Can athlates find new hla allele ? And wether there is a new version of athlates ?
-
Hello,
I'm using HLA-LA and everything seems to be fine (so far, we processed 50 exomes). We run tests with NA12878, NA12155, NA19128, NA11892, NA19127, NA19700, NA12400 (samples sequenced here wit…
-
hi
Thanks for your work in developing Instanovo. I have installed it on my linux system following the installation instruction. But I encountered problems in using your software. Please help, thank…