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I tried the program on PacBio hifi reads, which were for amplicon sequencing of some plant DNA samples, barcoded on both ends. The reason is that LIMA generated very simple report missing a lot of inf…
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I have multiple assemblies of hybrid and long-read sequencing. And its allowing me to run quickmerge on the output of quickmerge multiple times. I'm seeing increases in contig lengths and N50 but won…
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One consequence of the recommended op-orders `CGQAW` and `GAWCQ` is that garbage reads may end up being trimmed to lengths of 0 or shorter than the provided window size in the `--overwrite-low-quality…
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Good morning,
We have been using the Clonmapper protocol and we are at the stage of testing our barcode diversity after electroporation. We did a 138M reads sequencing and unfortunately our diversi…
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Hi there,
I am curious whether PlaScope can work based on sequences assembled by other software, such as soapdenovo, unicycler? Or just can work based on SPAdes ?
**And also,** can PlaScope work b…
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Hi @jonassibbesen ,
Thanks for providing this great tool.
I am now trying to download the data bundle from the link you provide. However, it always failed after ~1GB data is downloaded no matte…
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https://pubmed.ncbi.nlm.nih.gov/29507423/
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Hello,
Is it possible to use LUMPY-SV on single-end reads aligned with bwa-aln? Is it possible to use it only with read-depth information?
I read in a reply to an issue (110; resolved) that LUMP…
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### Is your feature related to a problem?
The ability to identify copy number variants from matched tumour and normal (_i.e._ non-tumour) samples having undergone whole genome sequencing with ONT seq…