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Hello,
First of all - thank you, @mr-c, for the response to my previous problem!
I've been further trying to run emg workflows, specifically emg-pipeline-v4-paired.cwl, on my machine. I have run…
aperz updated
6 years ago
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Hi guys, hope the week is going well!
As per the title, prodigal v2.6.3 is predicting genes across N stretches even when supplied with the `-m` flag. According to the documentation `-m` should make…
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Metagenomics as a field is starting to move to longitudinal/temporal analysis and visualizations. Yet, the are not many tools or packages with this type of functionality. This would be a new feature f…
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Hi
Thanks for the great tool. I am currently looking into plant metagenomic data - so host contamination/complexity - so I wasn wondering if COMEBin been assessed on how it perform with eukaryotic…
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It can be seen from the author's article (https://www.nature.com/articles/s41592-019-0431-x) that the first data uses metagenomic-recovered mataOTUs for the feast analysis. Relative abundances are cal…
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Update the frontend for the logs (samples logs deployment):
- [x] Split header, navigation etc into components
- [x] Refactor view logic out of templates, into service
- [x] Add mock API data for…
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Dear Linxing,
Good afternoon. Thank you for this excellent paper and tool! I read this paper and shared it with my lab members. I have some questions about the application of COBRA:
1. For the…
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Do you recommend any QC on the short and / or long reads before submitting to OPERA-MS for the hybrid assembly of metagenomic samples?
For short reads that would include removing adapters, trimming…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
I mean I have a list of predicted resistance genes from …