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We recently set the default for `aws.batch.maxSpotAttempts` to `0` in https://github.com/nextflow-io/nextflow/pull/5215 to avoid unexpected costs in cloud.
This is good, but it means we go back to …
ewels updated
2 months ago
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### Description of the bug
I'm getting an issue with a single file on the DEEPTOOLS_PLOTHEATMAP_PEAKS step of the pipeline (out of 140). I'm trying to resume the pipeline but it keeps hanging on this…
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I feel `rpy2` is unreliable, the R packages are cumbersome to install and a lot of additional dependencies. On top of that, the R methods are relatively slow compared to the `infercnv` algorithm in Py…
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E.g. make or airflow
@dylanhmorris @gvegayon @SamuelBrand1 I think you all had something to say about this. Feel free to drop comments here.
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### Description of the bug
I am running a single sample, and ended up assigning the same ID for both "sample" and "case" columns in the input samplesheet.
This crashes in a step where Tomte attemp…
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### Description of the bug
Once the pipeline finishes and some email is set, it will not finish sending it. Attached the logfile of whats going on in the background, doesnt matter if i keep the hook_…
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…
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## Description
At the moment we have 2 ways to build parameter files for nextflow pipelines. Rnafusion and taxprofiler are using cg CLI parameters and raredisease is using config files from servers…
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
gperu updated
4 months ago
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### Ask away!
作者您好，在我已经下载了wf-pore-c.sif情况下，我想使用singularity去运行wf-pore-c.sif的时候依旧会出现报错，申请需要拉去网络需求，然后就会终止我的任务。但是我已经在.bashrc的环境中设置了：
export NXF_SINGULARITY_CACHEDIR=/home/dingyuanhao/zxl_software/wf-por…