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Hi all,
I have got an error when I run merge_warpper.py. Can anyone suggest how to fix the following error?
I used the following script.
/home/tg484/quickmerge/merge_wrapper.py -p Dbia_merge_w…
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Hi, I would like to ask you about two small problems encountered when running svmu. Here's the script I used:
**nucmer --mum -p out msu.Chr6.fa r498.Chr6.fa
delta-filter -i 80 -1 out.delta > out.fil…
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I'm seeming to run into trouble with the bed file. Could we get an example for what is expected in the bed file? Is it simply the chromosome name the start BP (1) and then the length of said chromosom…
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Hi,
I am using circlator in conda. When I run progcheck I get:
Circlator version: 1.5.5
External dependencies:
bwa 0.7.17 /Users/laura/miniconda3/envs/sanger/bin/bwa
WARNING: Didn't find ca…
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Hi there, I run into this error from minimus2 "Bad file descriptor". Could you advice? thanks!
Bing
$ cat nucmer.error
20160706|100857| 13213| ERROR: mummer and/or mgaps returned non-zero, please f…
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when using transfer type `Multiple`, when one of the reference embls contains two sequences (like a chromosome and a plasmid), I get the error
```
ERROR: The reference file may contain sequences w…
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I'm trying mummer4 (4.0.0.beta2), but I'm running into a problem with promer.
$ promer --mum reference.fasta query.fasta
1: PREPARING DATA
2,3: RUNNING mummer AND CREATING CLUSTERS
4: FINISHING …
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I will use for some analysis to know where the associated contigs mapped to on the primary. The begin and the end of an associated contig can be fully specified by the nodes in the string graph. We c…
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Hi @alekseyzimin!
I have illumina + HiFi data. Can I do variant calling with superReadSequences produced by these two types of data?
Is some information lost during this proccess? Can I map the…
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While attempting to build the indexes using the included make targets I found out that it is expected that BLAST, Jellyfish, and nucmer (from the MUmer package) are available in the user's environment…