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Dear authors,
thanks for your great tool 'ccsmeth'. I try calling modifications on a hifi.bam generated from Pacbio Revio platform. However, I only get a empty bam files.
I have noticed the …
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Looking for insight/confirmation that Kaiju is operating as expected. My results thus far are suggesting that kaigu is misclassify reads that are very string BLAST hits to divergent taxa.
Specifica…
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Is it expected to have some neighboring additional nodes in the subgraph?
```
vg find -G sim-pacbio-reads.1.gam -x SK1+Y12.bwa_X.chrI.xg > sim-pacbio-reads.1.subgraph.vg
vg view -d sim-pacbio-reads…
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Hello,
Is it possible for PsiClass to be executed on long-reads generated from PacBio and/or Nanopore? If not, is it possible to make quick modifications to the code to adapt to long reads?
Than…
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`docker run` gives the error below. The critical bit seems to be this:
Checking server status with 'pbservice status'...
Executing: "/opt/pacbio/smrtlink/install/smrtlink-release_5.0.1.9…
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I tried the program on PacBio hifi reads, which were for amplicon sequencing of some plant DNA samples, barcoded on both ends. The reason is that LIMA generated very simple report missing a lot of inf…
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Dear Dengfeng,
Thanks for your tool.
I tried to use purge_dups to clean our assembly. I have some questions:
1. we have Pacbio sequencing data and Illumina sequencing data, I want to use all of …
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# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
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Hi Ryan
Great job. Looks like yet another really cool tool solving a bunch of important problems with long reads!
I noticed that you have option for pacbio reads. However, it might be great to hav…
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Hi, Is there any way to do this? This would be simpler than converting PacBio BAM files to fastq, and then somehow integrating the info from the original PacBio BAM file with the mapped BAM file.
A…
gevro updated
3 years ago