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Hi
I usually had no problems with the phobius step during annotation if I had run te predict and then annotation steps of funannotate
But now, in order to get a valid gbk file for existing NCBI …
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Hi Gavin,
Hope you are having a good day.
I was hoping I could bug you with a question. My aim is to do a validation with the KO outputs from both PICRUSt2 and my shotgun data as you outlined ni…
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> i did also have one unrelated question that I should probably post in another thread, but... i know ATLAS is currently geared towards bacteria, but are there any recommendations for modifications to…
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Hi,
Thanks for developing dfast -- it is a great tool!
Just a small question. I wanted to use rnammer for calling of rRNA genes. It seems that can be achieved by setting a custom configuration f…
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Hey all,
If this has already been discussed, feel free to point me in that direction! I looked through and couldn't find anything but it's possible I missed it!
In discussing species/genus lev…
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First off, thank you for your very nice paper, really interesting results! I am trying to reproduce your results, but I am getting stuck at the prediction using the Seq2Species model. I have installed…
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How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…
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#### Scientific goals
_The goal is to quantify telomerase activity and correlate them with telomere length and molecular alterations (TERTp mutation, ATRX mutation, etc)_
#### Proposed metho…
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This was brought up by @LTLA in issue #33 as possible ways to avoid issues when `emptyDrops` fails to properly identify the knee point. Here is my experience with a particular sample:
Barcode ranks…
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Some of this is out of date
https://www.pombase.org/browse-curation/fission-yeast-go-slimming-tips
I will suggest revisions shortly