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`chr11 69212123 Minda_19 N . PASS SVLEN=364954;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:182784:0:1:0:0:0,ILL_gridss188bf_155h,PB_severus_BND1178_2,ONT_severus_DUP1280,PB_ID_49027_2,ILL_2193678532:2,PB…
jzook updated
4 weeks ago
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### What would you like to see?
Would it be possible to see the embeddings associated with each Vector ID?
Something like shown in this project: https://github.com/flanker/chromadb-admin
Thank…
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Hello
How should I solve this problem?
```r
library(genomation)
transcriptFile=system.file("extdata",
"refseq.hg19.chr20.bed",
package="compGenomRDa…
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Hey there!
I've been unsure about the use of the flanking parameter in the [`fetch`](https://github.com/frederikkemarin/BEND/blob/ed8a8de1b34094c93b927c7941b41ff1be898bca/bend/io/sequtils.py#L88) m…
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GIVEN --num-flaky-test-attempts is N,
WHEN flank is run ,
THEN
- expect that only failing test is retried up to N times.
- expect that passing test is executed once.
I have tried running fla…
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Hello
The code of line 530-558 in the [06-genomicIntervals.Rmd](https://github.com/compgenomr/book/blob/master/06-genomicIntervals.Rmd) can't run successfully:
```r
# get transcription start s…
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When we move the pins for tx, rx and flank detection to PB00 - PB03 (we only need three pins), we have all core pin usage on the top of the chip, so the other three sides are entirely usable for other…
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issue: it seems that deadeye is sometimes considered a standard shot and will trigger abilities like reposition
expected behavior: being a special shot, it should behave as one and not trigger abil…
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Hi, I found the pangenie-index calculate the unique kmers in the variant flank sequences, so could you please tell me what the unique kmers are used for pangenie genotyping?
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Hello, I'm having issues to update the main header in the html table when I pass custom info-columns information:
create_report test.bed --genome hg38 --fasta hg38.fasta --info-columns CHROM START …