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Hello,
I have some CAGE sequencing data from oil palm. The reads were mapped to the genome. I have alignment BAM file, and converted into BigWig. I have problem running quantifyCTSSs because I couldn…
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Hi. I attemps to identify the viral entities from a group of the bacterial and archaeal genomes deposited in GTDB.
Identification of viral sequences from GTDB using Genomad exhibited lots of viral …
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)
GISAID query: G2060A, C23277T,C18657T
No. of seqs: 7(Australia 4(SA,QLD), Netherlands 1 Sweden 1 UK 1)
First: EPI_ISL_19406429, England, 2024-8-29
Late…
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Dear all,
I am running **SynTracker v1.3.0** on a haploid fungal reference genome with the default parameters.
For many of the .tab BLAST output files I get an error message, that it contains **…
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Hi,
Is it possible to run splice2neo by using hg38 genome reference sequence?
Thank you in advance.
Elisa
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Hi,
Thank you for developing a useful tool to merge SVs from sequencing datasets.
Currently, I am using HiFi data to call SVs using different callers: sniffles, cuteSV, pbsv, and svim for the Hi…
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### Description of feature
Create bedGraph for distribution of heterozygous sites across genome
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Hello,
I have my own dataset of about ~1500 references that I want to train the genus model on. I have simulated reads for them individually and now at the .tfrec creation step. My question is, do I …
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Hi pauline-ng,
I have a question about using reference genome to build my SIFT database.
I have two species (SP1 and SP2, for example). SP1 has a reference genome, while SP2 does not. SNP calling fo…