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Hello!
I want to use eggnog-mapper (web-version) output to build genome-scale metabolic model via CarveMe tool so I am interested in BiGG reaction ids. For some reason no bigg reaction ids was foun…
MEKGG updated
2 years ago
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from a private message:
> We are currently benchmarking sourmash as long read taxonomy classifier, meaning mapping them against genomes to assign taxonomy labels. But we struggle a bit on how best …
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Hi!
Can CHOP be used to do the actual read mapping, or does it just create a fasta file that I e.g will need to index with BWA and then map reads to? If so, I assume my final alignments will be rel…
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I am having a problem running vg mpmap. It has stuck on the `[IndexRegistry]: Chunking VCF(s)` for days. Is there a solution for this problem?
```bash
[IndexRegistry]: Checking for phasing in VCF(…
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HOME [tab] > Explore genomic data through the Viewer [heading] > View genome [button] > ADD CHANNELS [button] > [add channel] > channel config
1. Select "Colour By: Position", and expand/reveal the…
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Hi there,
I'm running a Hi-C integrated phased assembly for three different samples. Two of them have turned out well (estimated genome size ~650Mb, phased assemblies between 625 and 675, chromosom…
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Dear Unicycler team,
I chose Unicycler to assemble _de novo_ bacterial genomes with ONT sequences, because I tried with several ones and Unicycler gived me better results.
However I start to obser…
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opening a new issue to focus on *minimal* wording...
related to #3, and [this comment](https://github.com/dib-lab/2020-paper-sourmash-gather/issues/3#issuecomment-717248822) specifically. quotes fr…
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I could also produce a nice heatmap automatically from the resulting POCP TSV.
Here is some example code:
```bash
mamba create -n py-pocp seaborn matplotlib pandas
```
```python
import pa…
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Hi,
lately I have been playing around with the amazing gggenomes library. I'm interested in visualizing gene counts within non overlapping sliding windows. Similar to the GC content example in the do…