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Hi Josh,
The gff3 file resulting from GALES annotation is missing "product" attribute and it's qualifier for RNA features.
You had mentioned that prediction titles from barnapp were not carried ov…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
alevin
**Describe the bug**
alevin quantification produce a lot fewer cells than cell ranger count
**To Repro…
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On the genome landing page "Computational Prediction" (bottom left of the image) should never mask panel data.
Here is an example of a CDC ARBank genome that has gold standard panel data, but on th…
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Just noticed that the prokka 1.13.3 image is missing barrnap. Prokka still runs, but cannot predict rRNAs.
https://github.com/tseemann/barrnap
Barrnap requires:
* [Perl 5.xx](https://dev.perl.or…
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Dear All,
I am working with the GapSeq version fe42620 and I am facing the following issue.
My input is
`~/gapseq/./gapseq_quickstart.sh NZ_CP015698_1.fasta ~/gapseq/dat/media/MM_glu.csv`
The o…
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Hello Sung-Huan,
hopefully you are not tired by all the questions. The ANNOgesic paper didn't seem to address this issue in much detail. I was wondering how exactly do you select "manually" valida…
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Hi,
Firstly, I would like to appreciate such a nice tool.
I recently run rnammer to identify rRNA loci in my genome.
Because my final goal is to mask rRNA loci from bam file for RNA-seq quantific…
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Due to the limits of the previous version of the domain tags, acronyms had to be included within the primary label of the tag. This isn't necessary with these ontologies and the acronyms and labels ca…
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Hi,
I'm running IS mapper on 1 IS element, but the program runs into a error "List index out of range" (last part of on screen output is below). I've already adapted my gbk file to only have the c…
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when I try to run example, here comes an error during ORF prediction step.
I ues command:
`run-all-rpbp-instances c-elegans-test.yaml --overwrite --num-cpus 2 --logging-level INFO --keep-intermedi…
PSSUN updated
6 years ago