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> 1. What is the topic of your lesson or lesson proposal?
A comparison among workflow management systems used in the scientific field. The same workflow example (in the field of bioinformatics and …
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Hi,
We currently use QIAseq RNAFusion XP Assay and corresponding software to call for RNA fusions. Arriba as the second caller helps confirm or identify missing fusions. It performs well with any …
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Hi all, I was thinking that it would be useful to provide a sequence similarity metric to enable comparing protein or DNA sequences. The metric could compute all-by-all similarities or even employ som…
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A the moment we have the following structure:
- Homepage: 2 paragraphs PROTEIN STRUCTURE MODULES and BIOLOGICAL SEQUENCES; addresses to mailing lists; a link to the tutorial; a link to the API; a b…
ghost updated
7 months ago
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Is there anything available for inferring the FASTA record type from the sequence?
In earlier versions of FASTX I think this was done by default, and all of the records read in by `Readers` were re…
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This looks great Simon. I have been using Bioconductor:seqTools to achieve something similar for fq files. However as that takes an age to run I was wondering if it would be possible to add some hiera…
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Hi,
I've built a tree using a set of software tools and I would like to root the tree using iqtree2/UNREST. I tried running `iqtree2 -m 12.12 -s alignment.fasta -te tree.tre` but I get the followin…
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Hi, I wanted to try the phyloligo method on my data but encountered the following error.
I installed it through conda.
I obtain the error when using `--large memmap`.
```
❯ phyloligo.py -i
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Hi,
I encountered an unexpected crash in the 17th iteration of an Emirge run.
This occurred only with one dataset and I reproduced the bug on 2 different computers.
I have no message in STDOUT te…
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We need from each sub-group is a contribution of 2-3 paragraphs describing your group's hackathon successes and ongoing activities. Also (to save Mark look-up time) please list all authors from your …