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Hi,
I am using this script to deal with a fasta file produced from stacks v2, I followed the instruction with the command:
Rscript ./RAD_Haplotypes.R --fasta=populations.loci.fa --map=/popmap_hapl…
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
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I used mafft to align query sequences against reference msa (both in fasta format) and also the combined msa is in fasta format. Right now I have to convert everything to phylip to use the split comma…
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Below is a simple workflow that conditionally creates an index file for a FASTA reference file before using it as an input to a CWL tool.
```bash=
#!/usr/bin/env bash
if ! [ -f data/reference.f…
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Hi,
Attempting to use Corason within the "tutorial" from BiG-SCAPE/Corason site using TauD and selected genomes (https://bigscape-corason.secondarymetabolites.org/tutorial/), on a Windows 11 Opera…
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Hello developers!
Thank you for such an great tool!
I wonder if there is an option or way to keep the pyrodigal cds predictions in a gff format or convert the tsv coordinates to gff
Thank you…
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Minor issue, but the .fna file extension for FASTA is not recognized:
```what(): extension fna is not a valid extension for the readsfile Did you provide a valid reads file?```
Would be nice to…
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I am trying to run this for the first time and I am encountering the below error. The FASTA_mitos directory and the .gbk file are both being created but both empty. Any idea's what's going wrong? Than…
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- the pipeline repo has an [autocuration](https://github.com/FabianDeister/Library_curation_BOLD/blob/main/workflow/scripts/autocurate.pl) script that produces a FASTA ref library
- the resulting FAS…
rvosa updated
5 months ago
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When choosing PhyloTree 17.1 (RSRS) as phylogenetic tree, I always get an error: "Job failed."
PhyloTree 17.0 works fine.
Input format: FASTA