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Hi Giulio,
The array Finngen2 Axiom custom array from ThermoFisher was used for genotyping in our project. We would like to convert the .CEL files to a .vcf file to run the MoChA pipeline. We found…
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Hi,
There are two parts to my question:
1.) Unlike indels, complex variants reported by vardict do not have anchor bases, even if the complex variants include indels. For some of these variants, d…
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Hello,
Thank you for creating this useful package (and also the genotyping package, cellsnp-lite) that has been critical to my work in bone marrow transplant research.
I have ran the vireo packa…
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Hi David,
in the call for `correctInvertedRegionPhasing`, I get the following error:
```
157 Working on chromosome cluster11
158 calculating deltaWs ... 1.07s
159 findin…
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Hello,
I was wondering wether it is possible to annotate translocations with svtyper. In the header of the svtyper vcf output I see these types of SVs
##ALT=
##ALT=
##ALT=
##ALT=
##ALT=
##A…
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Hello, thank you very much for your SubPhaser software, which is very useful for genotyping. I used HIFI and HIC to assemble the genome of Fragaria x ananassa but I do not know the homology of the 28 …
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Feedback from user looking for information on PCR genotyping. Asked for primary sequencies, PCR conditions and confirmation on whehter sequencing had been done as part of validation prior to phenotypi…
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Expected Behavior
The existing terms are confusing.
- Basic project_types (folder, breeding_program) are not within project_type, and a basic 'trial' project_type is missing.
- It's unclear ho…
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Hello,
I came across your tool/paper and found it really useful for our research. I was wondering if seGMM could also be used with imputed genotype array data? From what I understand, your focus h…
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사육현황의 케이지별로 표기하고 Mouse Info 에서 수정 : TA 권한
케이지마크 예제
B6SJL4-5X-8 (5xfad)
B6SJL7-N-6(noncarrier)
B6SJl7-5 (genotyping 이전)
SJL3-4 (sjl)
B67-6 (b6)
Bsjl8-1(b6sjl)