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Hello, I runned the following command :
`java -Xmx64G -jar pilon-1.24.jar --genome nano.fasta --frags illumina.sorted.bam --changes --fix all `
But the script end before with the following prob…
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https://github.com/clintval/sample-sheet
We planned on adding validation:
https://github.com/SACGF/variantgrid_sapath/issues/230
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Dear author,
There are very high ratio unmapped reads for **'too short'** and **'other'** while mapping to `T2T chrm13` genome, but **it worked for hg19 genome**. BWT, there is a **83% reads mappi…
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Hi!
I am running ISEScan on a large set of genome assemblies (consisting primarily of assemblies from Illumina data and a couple PacBio genome assemblies). The tools runs great on the test data and m…
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Hi,
Im trying to combine my gvcfs, first using gatks validatevariants but i get the error:
A GVCF must cover the entire region. Found 16 loci with no VariantContext covering it. The first uncove…
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I am trying to extract animal mitochondrial genome from short reads data using getorganelle. the script is-
get_organelle_from_reads.py -1 /home/pragya/hornbill/great/NZH/analysis/fastp/NZH_illumina…
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My command is as follows:
`Trinity --seqType fq --max_memory 1000G --CPU 26 --samples_file ./sample.txt`
Then I get the error information:
> -----------------------------------------------------…
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Show data capabilities to a user based on a user's workgroups
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Hi, Illumina discontinued the earlier version of the EPIC array. Can you suggest a way to use RnBeads with EPIC v2.0 data?
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I have tried to submit 6 paired illumina sequence fastq files through the Galaxy portal but all the analyses fail. All modules fail with the same error message:
python3: can't open file '/home/gala…