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1. Make sure you have Git LFS installed:
```bash
sudo apt-get install git-lfs
# Initialize Git LFS
git lfs install
2. Navigate to your `DATA_ROOT` and clone the source:
```
GIT_L…
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The PMID:25211582 has not been integrated into `human_protein_citations_mutation_literature.csv` because it has been replaced with PMID:25296354 (https://pubmed.ncbi.nlm.nih.gov/25296354/).
In the…
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Could not parse feature: Unrecognized protein feature type: "Topological domain" (skipping)
Could not parse feature: Unrecognized protein feature type: "Transmembrane" (skipping)
Redo the SLC32A1 …
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**Is your feature request related to a problem? Please describe.**
For the RDF model, I intend to model PPIs from StringDB as `:has_participant :some protein` for each involved protein.
**Describe…
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We've received a request to update the field related to "Has this gene or genes been implicated in the above disease?" in the Protein Interactions section of the GCI. Example: https://curation-test.cl…
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Hi, I have around 3.5k proteins that i want to query from py4cytoscape. When I limit my input to 500 proteins it works fine however when I dont, I get URI Too Long error. Is there a way to get around …
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Thank you so much for your rich and meaningful work!
In actually learning about this dataset, I came across some questions I would like to ask you, as follows:
Is it possible to give the initial str…
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Hi
We ran DIA_spec_diaPASEF workflow and DIA NN output protein group files does not have protein name. However, if i run DIA NN without using FragP
[PG_output.xlsx](https://github.com/user-attachme…
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Hello, I want to use padloc-2.0.0 with the fna option it works well but when I want to to use it with annotated proteins with the --faa and --gff options I have this issue ERROR >> 3 protein sequence…
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We will want to support mutations of proteins (and other targets like RNA). I am not sure if we want to support this via a mapping method, or have something simpler like a residue ID and then the amin…