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hi,
thank you very much for putting together this package to enable reading propriatary Oribtrap RAW files into R. i'm trying to read and process the RAW files at
https://www.ebi.ac.uk/pride/ar…
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Process 'MSFragger' finished, exit code: 1
Process returned non-zero exit code, stopping
~~~~~~~~~~~~~~~~~~~~
Cancelling 31 remaining tasks
08:43:59 ERROR: Error writing log to file
java.nio.chan…
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Dear Developers,
Finally I run my fragpipe-workflow (LFQ-MBR) completely from a script (that was developed with a smaller DB and it run successfully).
Using now my large MetaproteomicsDB I end u…
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Hi Vadim,
DIANN is a great software for large-scale analysis. I have two questions. First, I'm analyzing Arabidopsis DIA data. Most of the Arabidopsis samples use TAIR10 database to do proteomics d…
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```
(Collect change requests for the CV here.)
[Term]
id: PI:00216
name: sequest:PeptideRank
def: "The SEQUEST result 'Rank' in out file (peptide)." [ref:ref]
is_a: PI:00153 ! search engine specific …
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Object representing matches between experimental and reference spectra.
The data we have is:
- `Spectra` representing the experimental spectra
- `Spectra` representing the database/reference matc…
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Krasnov, George Sergeevich, et al. "PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics." Journal of proteome research 14.9 (2015): 3729-3737.
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Galaxy server : usegalaxy.eu
History link: https://usegalaxy.eu/u/_luisfr/h/peptidegenomiccoordinateissue
Tool version : Galaxy Version 0.1.1
While executing **Peptide Genomic Coordinate (followi…
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I am trying to perform PSM with SearchCLI. The input are peak-picked MGF datasets, and I am trying to use Myri-match, X!Tandem and MS-GF+. Both Myri-match and MS-GF+ fail, with X!Tandem managing to fi…
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Dear all:
We have a meeting today about BioContainers for Training, how to generate them, How to build
them and best practices. The training container is not a "normal" container because it conta…