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I tried to download and use the Version 19 16S rRNA Reference (PDS) instead of the older taxonomy files in the Galaxy 16S Microbial Analysis with mothur (extended) tutorial (https://training.galaxypro…
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- [x] increased polyadenylated 5S rRNA level during cellular response to phosphate starvation
- [x] increase tRNA level during cellular response to phosphate starvation (level)
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Plant mitochondrion have three rRNA genes:
- 5S `rrn5`
- 18S `rrn18`
- 26S `rrn26`
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## Bug Report
CollectRnaSeqMetrics failed to work for the RIBOSOMAL INTERVALS on the 639th sequence of reference genome, but is OK for the INTERVALS on the 25th/1st sequence.
### Affected tool(s…
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This is outside the current scope of the tool, but would you consider adding NCBI Entrez search support as an alternative to supplying the accessions directly?
e.g. https://eutils.ncbi.nlm.nih.gov/…
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### Description of the bug
When a config variable uses `${projectDir}` in its definition, the `nf-core schema build` tool reports that the pipeline config does not match the schema and requests addin…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
veghp updated
2 weeks ago
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hello,
Both pip and conda install show different usages as compared to shown on the readme.
Conda install : https://anaconda.org/bioconda/rna-seqc
usage from conda install:
~/anaconda3/bin/r…
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when i use this command:
**refinem ssu_erroneous -x fasta maxbin3/ taxon_profile_output_dir3/ ~/biosoft/diamond-master/gtdb_r80_ssu_db.2018-01-18.fna ~/biosoft/checkM/RefineM-master/RefineM-master/gt…
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I am trying to control CPU usage for the DRAM.py distill pipeline on DRAM v.1.5.0 that I am using on DRAM.py annotate .tsv output from metagenome assembled genomes. As I am using a shared lab server w…