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Hi!
Just wanted to quickly confirm if sc.dat is "The cell-by-gene raw count matrix of bulk RNA-seq expression. rownames are bulk cell IDs,
while colnames are gene names/IDs." as mentioned in the t…
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### Project short name:
HumantCREsAtlas
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1OAMwBTrVRnEsF37GI4…
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### Description of bug
During the execution of 'spades.py --test', the process terminated abnormally with the following error message:
== Error == system call for: "['SPAdes-3.15.5-Linux/bin/spades…
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Hi Gabor:
The script that I have written takes an excel file that contains results from RNA sequencing (MARS seq) that compares two groups:
1. WT_PyMT: No.I and WT.sc
2. NSD1-KO: KO.2 and KO.3
…
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**Describe the bug**
When the program runs to the prune2df step, it will report an error: ArrowInvalid: Not a feather file. I read your previous discussion and thought it was a problem with the integ…
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Hi, I have installed VirTect and dependent tools. When I test VirTect using "bash Run_test_VirTect.sh", I didn't obtain some results with the test data.
The run process is prompted with a warning("W…
MinS1 updated
4 years ago
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Hi,
Thanks again for the great work. :)
I'm testing cellrouter with our own data (Two conditions at day 3). There are ~20 cell sub-populations identified. K = 12 which was defined by findK functio…
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Hi,
I appear to be getting the following error when running the following command hybracter test-long which I presume is related to medaka. I wondered if you have encountered this issue before and …
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Hello,
Thank you for developing so nice software!
Thank you in advance for great help!
Best,
Yue
```
> cellchat cellchat cellchat cellchat cellchat cellchat netVisual_embedding(c…
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I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…