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hi Nick,
thanks for the great tool!
Below is the code that I use to process TRUST4 output and combineTCR; it had worked perfectly fine a couple weeks ago, but today I was rerunning the code and …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/bhuvad/SpaNorm
Confirm the following by editing e…
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Hi,
I'm using Banksy with the multisample vignette. I see that to create the SpatialExperiment object, the raw count and log transformed matrices are required. We have the raw and SCT transformed d…
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@gcyuan @bernard2012 @wwang-chcn @RubD I am getting the following error. The path are correct.
> instrs data_path_F2_h5 = "/Users/Desktop/F2/outs/raw_feature_bc_matrix.h5"
> data_path_F2_tissue…
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Hello there,
I have been using BANKSY for each sample separately on Xenium data but I was wondering if there was a way to do the multisample analysis on seurat object as well or not? by converti…
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Hello,
I'm running into an issue running concordexR on my dataset. I'm running with just loading the metadata, trying to follow the example code from [the liver dataset in the biorxiv github](https…
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library(Giotto)
Loading required package: GiottoClass
Giotto Suite 4.1.0
> installGiottoEnvironment()
Error in .os_py_path(envname = path) :
Assertion on 'path' failed: Directory '/home/dl2373…
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hello, thank you for creating such an outstanding work.Recently, I wanted to input the datasets, but it shows an error:
library(spatialLIBD)
library(ExperimentHub)
packageVersion("spatialLIBD")
eh…
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Please ask questions about how to use `spatialLIBD` on the
[Bioconductor Support Site](https://support.bioconductor.org) using the
appropriate tag(s) including the one for this package.
**Note**.…
hym97 updated
3 months ago
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When trying to run app.R, I get the following warnings which do not allow me proceed:
Need SpatialExperiment >= 1.1.5 but loaded version is 1.0.0
2: object ‘imgData