-
When choosing PhyloTree 17.1 (RSRS) as phylogenetic tree, I always get an error: "Job failed."
PhyloTree 17.0 works fine.
Input format: FASTA
-
```
As discussed on the forum:
https://groups.google.com/forum/#!topic/ruffus_discuss/ErfMSsKNFB4, this
parameter would specify a folder to put all intermediate/final files. Currently
it can be don…
-
```
As discussed on the forum:
https://groups.google.com/forum/#!topic/ruffus_discuss/ErfMSsKNFB4, this
parameter would specify a folder to put all intermediate/final files. Currently
it can be don…
-
Hello,
Along the same lines of issue #94, I was hoping that the [UNITE ITS database](https://unite.ut.ee/repository.php) could be included as a special database in Kraken2. The FASTA headers contain …
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## Bug report
### Expected behavior and actual behavior
I have a subworkflow that I'm importing two times and invoking like this:
```nextflow
include { ANNOTATE as ANNOTATE_BCR } from '../s…
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Hello,
I need to download genome of multiple bacteria species, and to make it faster, I want to use a bash script:
`#!/bin/bash
species=(
"Bacillus anthracis"
"Bordetella bronchiseptica…
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### Description of the issue
Feature request by @s.irac@garvan.org.au
`I would like to check if we could run the data output from the immunoseq ? I have a BCR dataset that I would like to analys…
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good morning! Two days ago I am using your script to try to improve an assembly of a genome. First of all, I used the flye program (assembly) then Medaka (polish) and after that, from the consensus se…
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I am trying to run ```g2gtools extract``` with a g2gtools DB created from a GTF and a FASTA. It is running successfully but after 14 minutes it stops:
`2024-08-05T19:38:02.180415541Z GTTCCAATACTGTG…
-
I need to run both `fcs-gx` and `fcs-adaptor` on a lot of genomes. To speed-up things, I was thinking if I could run them both in parallel (on the original genome fasta):
```bash
genome.fas.gz -> …