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The **BLAST** panel from which the BLAST search will be performed shall have conventionally the following view, e.g.:
![image](https://user-images.githubusercontent.com/45459424/119860622-2fb1b980-…
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I have run into an interesting situation when comparing assignments between nucleotide and protein databases. My databases contain NCBI bacteria, fungal, and human sequences built using kraken2-build …
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I would like to compare kmers from two nucleotide sequence fasta files but at the amino acid level, whereby DNA sequence --> peptide sequence --> kmer comparison at aa level --> extract non-unique kme…
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Review how JSpecies implements ANIb with regards to the command line options to NCBI BLAST, including if we should be using ``-max_target_seqs 1`` here (as that heuristic can discard the best hit in s…
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Description: BA.2.86.1/EG.5.1* (or XDT or XDL or EG.*), BA.2.86.1 Spike, EG.5.1 end.
Private mutations: Really private: C1779T, C2070T, C8802T
From BA.2.86.1: T11614C
Breakpoints: between nucleotid…
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**Is your feature request related to a problem? Please describe.**
Yesterday, the HVNC approved the suggestion to update the nomenclature to allow c. positions for intergenic variants in the context …
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Hi all, thanks for this MMseqs2 that seems very efficient.
Unfortunately it seems to not be willing to run on my machine :
mmseqs easy-cluster /Users/s/Documents/Albatros/protein//short_name-Gr…
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Data clamp needs to check if both sequence types are same, such as both should be `SequenceType.NUCLEOTIDE` or ... :
GraphicalModel
```java
default boolean isClamped(String id) {
retur…
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Hi
I found this R package quite handy after writing my own custom functions which were otherwise verbose. I have begun to like using this package but I have queries related to `identity` and `cover…
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### Description of feature
The `predictions/peptide_predictions.tsv` file looks like this right now:
```
peptide_id start end peptide_type peptide_class prediction_tool nlpprecursor…