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Dear bcbio community,
In 2011, the Harvard Chan Bioinformatics Core began developing bcbio as an open-source framework to tackle challenges in reproducibility and scalability in the field of next-g…
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Hi, @eblerjana
I found that several samples's peak is wrong according the pangenie log. So would you mind teliing what's the influence of these peak? Is there any way to set peak?
Here is a ex…
baozg updated
2 weeks ago
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Hi,
We are trying to analyse variants in the data obtained from oxford nanopore can we use MToolBox to analyse such data, is long read sequencing data supported by MToolBox?
Thanks and regards,…
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This is usually where we try and insist on the necessary pre-requisites explicitly.
For this lesson it might also be the opportunity for providing links to background material which are needed.
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### What are you missing?
Add the upload date to the downloaded metadata.
### Why do you need a solution?
Sometimes users want to know which measurements were sequenced together (= uploaded togethe…
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Hello!
I have ONT data of a single amplicon that is ~4500 bp in length and would like to identity SVs. I am interested in any SVs present, but specifically, there may be repeats introduced by a h…
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Hi,
Is VTAM, like DADA2, dependend on the sequencing technique used and thus limited to Illumina sequencing? Or can it also be used for ONT sequencing data? I can't find it in the article, although…
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**Context:**
I'm very new to DNA sequencing and bioinformatics, and I'm currently following the DADA2 tutorial for primer identification and removal. My sequence data was generated using Illumina Mi…
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Hi,
We'd like to request a new term as part of the CFDE project for Kids First DCC.
new term label: linked-read sequencing assay
parent: DNA sequencing assay, OBI:0000626
definition: A DNA seq…
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Thank you for developing this excellent software!
I have 20-30 genomes and about 100 long read ONT data. However, the long reads and genomes are not sequenced from the same individual, but belong to …