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Hello,
I am trying to assemble plant mitochondrial genome.
First I assembly choroplast genome and I get Contigs*, Merged_contigs* and Option_* files as a result. So it looks OK.
But when I try to a…
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Whenever the pipline finishes successfully writing a file intended for downstream consumption, I'd like it to append a line to a special "checkout" file denoting the last modification time and the rel…
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Hi All - having many jobs fail with this type of error, which seems to indicated perhaps something about a poorly formatted fasta file? One issue is that I can't seem to find the offending file `GCF_0…
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Hi
I am working on assembling a genome using hifiasm, and I obtained a phased assembly (hap1). However, the size is bigger than I expected and it has a high degree of duplication per BUSCO. I am su…
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View details in Rollbar: [https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/5342](https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/5342)
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UploadPipeline 7903 failed. Filenam…
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When comparing the input and output values, it seems that the output values represent the central residue number of each contig from the input.
For example, for the input range 27-32, the output is…
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Hi,
Thanks for your excellent software.
However, I also meet with the similar error when running the TGS-GapCloser. The log information is listed as followed:
~/software/TGS-GapCloser/tgsgap…
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Hi all,
Recently I'm trying to use kairos assess module and I found that it only worked with 150 bps reads. 250bps reads couldn't be mapped back to contigs. May I know how to fix this?
Thanks
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Hello, arangrhie,
Merqury has proven to be an excellent tool for evaluating genomes.
I currently possess a haplotype-resolved genome from an autotetraploid species, which includes four haplotype…
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## Short description of the problem
Hello again. I found a rather bizarre case in my testing and I'm a bit stuck now. I'm trying to run `anvi-cluster-contigs` with MaxBin2, and it's failing due to …