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Defining mutations:
KP.2 > Orf1a:P1803L (C5673T = PLPro_P240L) > C14220T > S:I934V (A24362G) > T931A, G8872A, S:N30K (T21652G)
Query: T931A,C5673T,G8872A
Samples: 7 ( 6 on Gisaid)
Countries: C…
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Credit: spotted by @HynnSpylor
LU.2 reached a sky-high prevalence in Ecuador in late June around 25%.
Looking at its tree i noticed a S:F176F branch that got then splitted in two interesting subbr…
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KP.3.2+G25617A+G11761A, T21653C(S:S31P)
GISAID query: G11761A, T21653C, G25617A (By @FedeGueli )
No. of seqs: 3(Hubei 1 Gansu 1 USA from Hong Kong 1)
First: EPI_ISL_19299334, Hubei, 2024-7-7
L…
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XDV.1+C8299T, C16323T, G22112A, C28432T, A22995T
S:G184S, K478I
Orf9b:S50L
GISAID query: C28432T, C22995T, G22112A, C8299T
GISAID query for S:F59S branch: New query : C12854T, T21738C, C25671T…
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_Edited on October 4:
Now Usher shows many branches of KP.1.1.3 in one only tree. Hard to find a credible query for this, but ushering from this proposal could be enough to track the whole thing._
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1735
There is another T572I branch under KP.2.3 besides KP.2.3.6. Unlike the FULL QUAD KP.2.3.6, this one emerges before the S:S31…
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Just spotted a KP.3 sublineage that has got S:Q52R defining mutation of JE.1.1.1 and much earlier of B.1.525 [see **https://github.com/cov-lineages/pango-designation/issues/4** (!!) ]
Defining muta…
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```[tasklist]
### `KP.3.3.1` Recombinant Islands
- [x] [Branch 1](#branch_1) : `KP.3.3.1` and `KS.1` recombinant gaining `S:F59S` and `S:R346T`, Designated XEM [query: `C6568T, T21738C, C23039G`…
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Hi there! I'm trying to set up Pyro-cov using GISAID but I don't have a data feed yet. It would be possible to use the pipeline with other data sources, like fasta files I have been downloaded? Would …
joicy updated
2 years ago
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Transferred back to https://github.com/sars-cov-2-variants/lineage-proposals/issues/1671
In the batch uploaded today from Philippines i noticed a weird a double AA mutation in the spike in a row.
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