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Dear Rosetta team,
I amt rying to predict Protein structures with short poly-U RNAs to identify putative RNA binding sites in proteins. However, the program fails because no database hits are fou…
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### What happened?
Hana Snow is the engineer for SEQR.
Previously, SEQR used elastic search as its datastore. Unfortunately, elastic search was very expensive because, to get reasonable performanc…
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Hi Jon,
I am running funannotate in a conda env created recently, But when I executed the test commands "funannotate test -t all --cpus 5", It reported an error, What should I do to make funannotate …
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Hello,
I am trying assign about 800 microviruses to the families you suggested and ran MOU-UP with all their proteins. It ran through without errors but I can't make sense of the output and would a…
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I'm trying to understand how `microtrait-hmm` traits are organized and how to work my way up the hierarchy.
Here are the trait HMMs here:
https://github.com/ukaraoz/microtrait-hmm/blob/master/da…
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For issue #54.
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Searching using genome id
Genome id gets lost
 : cannot open the connection
Calls: read.nexus -> scan -> file
In addition: Warning mes…
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Hi
I am trying to run the following command to assign taxonomy to a set of MAGs (on the cluster ):
gtdbtk identify --genome_dir /home/naima17/scratch/cholera_nov2020/complete_only_MAGs/dereplicate…