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Could you provide a minimal example for LCA taxomic classification (diamond db and query sequences) using diamond blastx. I have tested concatenating some genes from different species but it always gi…
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Hi @marieBvr ,
I met same issues with #1 , I also continue the install piplines, but the size of taxonomy.tmp.sqlite not changed. can you help me resolve it?
Sincerely yours,
Nailou
PS: Th…
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Hello,
I am setting up the local database using create_local_taxonomy_db.py.
It created a database of around 5 Gb (5,541,363,712), but I also received an error (below), so not sure if it worked...…
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Hey I am having some problems running diamond.
I run this command for db creation:
diamond makedb -p 40 --in /home/blast_db/nr.fasta --taxonmap /home/blast_db/nr.acc2taxid.txt --taxonnodes ../…
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Hi everyone,
thank you very much for this nice contribution to the community!
I tested GenEra on our cluster.
here, I observed the following on stdout:
```
Illegal option --
Illegal option…
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Hello,
I have been trying to create a database based on RefSeq archaea, bacteria, and fungi using the command below:
```
downloadRefSeq.pl --DB refseq --seqencesOutDirectory seqs --taxonomyOutDir…
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**_[Configuration File](https://github.com/CAMI-challenge/CAMISIM/wiki/Configuration-File-Options)_**
**MAIN**
- `seed`: Sets seed to bee consistent with RNG.
- `phase`: Full run (0), Only commun…
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Hi there, when I run this command, "CCMetagen.py -i out.res -o results"
it gaves message below and then went to error state
NCBI database not present yet (first time used?)
Downloading taxdump.t…
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hey
I am just working through the code [here](https://blobtools.readme.io/docs/taxonomy-file)
```sh
# Download database
wget ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowled…
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I have used the command "hgtector database -o db_dir --default" to download the database. After downloading the protein files successfully. when downloading the genome files. it is showing following e…