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When I was running VirSorter, it didn't report any error. But when the program finished, one result file, namely VIRSorter_global-phage-signal.csv hadn't any content. Can someone help me?
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Dear Dr. Sergey,
As you suggested in 197th issue, I replaced -f with -q. I executed the below shell script in my workstation. Scaffold step was running for a long time, then I encountered following e…
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Hello,
I am running into trouble identifying viral contigs from a metagenomic dataset. I am running VirSorter2 on ~130 metagenomic samples utilizing metagenome-assembled scaffolds as the input. Som…
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Hey I'm reading this paper
https://www.biorxiv.org/content/10.1101/2020.11.27.401018v1.full.pdf
I'm trying to get the latest version of mmseqs with the feature --majority but I cannot see where to …
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Hi,
I run virmap on c5d.24xlarge (96 vCPU, 192 GiB, 4* 800Gb) instance with an 838Gb SWAP setting
```
# swap setting
$ sudo mkswap -f /dev/nvme3n1; \
$ sudo swapon /dev/nvme3n1
$ free -h
…
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Hi Antonio,
Thanks for developing the genomad pipeline. I found it very easy to use and the outputs were straightforward. However, I do have a few questions that I would like to hear your suggestio…
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I use Nextpolish on an HPC cluster, which is working flawless, if I use only short reads. But after activating the hybrid option (sgs+lgs), then it fails, delivering the following error massage. It is…
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Hello,
Thanks for the great program! I only have one minor complaint and one possible suggestion. The minor complaint: I noticed that metacerberus looks for N repeats and removes them before it annot…
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Hi there,
I ran vRhyme on several hundreds of samples, and all went smoothly except for one specific problem file, wherein the program seems to write to output files but tries to read from a non-ex…
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All throughout the pipeline, there are places that assume paired-end reads, and it's mostly how we wrap underlying tools, probably not the underlying tools themselves. For example, BAM->fastq conversi…