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I loaded up a graph with a 142 bp path in it. I asked to see that path from 1 to 142. I was told that that ran off the end of the 142 bp path, and I had to use 1-141 instead.
We should accept 1-based…
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Dear developer (Rongxin),
I am impressed by the package that it can compute the peak-to-gene link. You mentioned in the tutorial that '# convert the pair to genome browser arc plot format'. What is…
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Dear all,
I would like to know if there is a way to properly visualize methylation information obtained from modkit in IGV genome browser (testing IGV 2.17 snapshot).
In particular, I ran Dorado wit…
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I tried to download all of the genomes using the "Contig accession" column in the supplementary table and these are the ones that were not recognized:
411479.31.con.0020
1351.557.con.0001
1280.10…
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(Maybe increase the background "glow" of the vertical line position number.)
(Maybe change the colour of the vertical line's position number, to something other than black, to help distinguish it f…
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Hi!
We are using IGV.js to plot CNV estimates genome-wide - we are plotting WIGs for this purpose. We noticed, however, that (unlike the Desktop version) IGV.js does some form of aggregation of the W…
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## Describe the bug
The Samples tab in the Cohort Browser is returning a meaningless (to me) string rather than interpretable content
## To Reproduce
Go to http://bioinfo.hpc.cam.ac.uk/web-apps/i…
pamag updated
2 years ago
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Hi
Recently I try to run ATAC-seq data based on ENCODE pipeline, when I call peaks, I notice the default value for some certain species like human and mouse, while my species is animal (e.g., sheep)…
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Hi all,
It may be a silly question, but how can I visualize my results after obtaining my hal file and convert it to both maf and bigmaf? Is there any special visualization tool? I did not manage t…
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Hi,
I read your Nature publication (https://doi.org/10.1038/s41467-018-07771-0) and would love to generate aggregate single cell profiles in figure 3A and 4D's bottom panel for my data.
Could …