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The zoom in and out buttons in the control panel primarily work on the left subpanel. To recreate:
1. Go to https://proteinpaint.stjude.org/?appcard=hic and click on the 2 chr example.
2. Click on…
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@ahwagner when talking about #76 :
> 7:140,485,608, which aligns directly adjacent to ENST00000644969.2_6 / NM_001374258.1 ([browser view](https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&lastVirtMod…
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## Describe the bug
The Samples tab in the Cohort Browser is returning a meaningless (to me) string rather than interpretable content
## To Reproduce
Go to http://bioinfo.hpc.cam.ac.uk/web-apps/i…
pamag updated
3 years ago
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I wanted to build a database with custom k-size values containing all genomes under [taxid Shewanella](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=22&lvl=3&lin=f&keep=1&srchm…
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As suggested by a user:
> It would be great to have a genome browser for methylation data where you could group by clinical data to get methylation averages visualized with gene models and other an…
inodb updated
8 months ago
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we need to figure out what needs to be done to get monarch tracks in the ucsc genome browser
@diekhans promised to help :-)
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**I just downloaded the docker image of the browser. It runs well, but can't load in genome annotations.**
**Here is how it looks:**
**Here is apache log I got:**
> root@9010c885452b:~# more…
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I have found this [repository](https://github.com/deeptools/pyGenomeTracks) which seems to allow to produce nice genome browser using bigwig, bed files, etc ...
This might be a good thing to add i…
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**Describe the bug**
Submission of a large deletion description generates a "No transcripts found that fully overlap the described variation in the genomic sequence" error even though the deleted reg…
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Any plans on adding CIGAR strings to SAM output so I can load the alignments in a genome browser?
_Originally posted by @yhoogstrate in https://github.com/vpc-ccg/circminer/issues/4#issuecomment-64…
fhach updated
4 years ago