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Hi,
Alexander Gabel ,
It is a great honor to use the pipeline for phylostratigraphy that you shared.
However, I have recently had just one problem using your shared pipeline for phylostratigr…
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from F2F:
infectious disease should not be separate from human and from non-human: all the infectious diseases that occur in non-human have a different name (and is a different disease) in human.
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HQ+LQ xz batches compression ratio is 4.4% (lower is better, this is the compressed size over uncompressed size ratio):
```
/hps/nobackup/iqbal/leandro/cobs/compress_all_data/mof-compress/661k_compr…
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Hi Jody,
I ran TBprofiler using the version 4.4.0. However, I found several samples failed but could work in previous version.
The error log are similar. Below is one of them as example.
Bes…
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Hi there,
I have been attempting to create a VCF file mapped to a reference database (formatted as a single .fasta file) and keep getting a KeyError: '3' message, terminating the run. I have attem…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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After during benchmarking, several processes stalled (see https://github.com/karel-brinda/mof-search/issues/83), I'm getting the following errors after re-running the pipeline:
```
$ make match
s…
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Hi,
I noticed that `gapseq_find.sh` never cleans up the temporary directories it creates. After some parallel runs this will leave behind *a lot of* directories in `/tmp`. Would be nice if the scri…
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This could substantially improve the COBS part.
I think we already have everything for this:
1. COBS is fixed and tested with the memory mode
2. We already have a mechanism to reduce the sum of i…
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Hi,
GenEra is so great that I would like to use it to study the genomic phylostratigraphy of Mycobacterium tuberculosis.
GenEra appears to have been designed for use in eukaryotes, but I still w…