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## Expected Behavior
searching against MMseqs2 databases after clustering step
## Current Behavior
after mmseq2 db creation (giving a type nucleotide db) and clustering, it does not proceed due t…
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I am running prodigal of a hybrid assembled genome using the following command:
`prodigal -i $assembly -o $path/annotated/$outdir -a $path/annotated/$protein`
and I get the following logs:
``…
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Hello，
Will the databases of HMMs ( cellular organisms and GVOG) be updated?
If I want to build my own database, how to configure it to be compatible with viralrecall?
How can I skip the prodigal…
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Hi there,
I'm trying to install Prodigal on my HPC. Here is the error I get when running _make_
`gcc -O2 -xCORE-AVX2 -pedantic -Wall -O3 -c -o bitmap.o bitmap.c
gcc: error: language CORE-AVX2 no…
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Hi,
I am attempting to annotate a customized VCF file using NCBI's GFF and (fna) FASTA files for the Newcastle disease virus (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004786615.1/). However, …
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To do:
- [ ] Co-assembly of ROCK samples
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Hello,
I am unable to see a .db file created using either extract or convert. I set up the same sample folder as the tutorial, with 10 of my genomes in the fasta folder.
java -jar EzAAI_latest.…
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Hi,
I have run your tool as a docker image on my local mac. It runs beautifully. Thanks.
However I need to run it on an HPC as a singularity container (cannot use docker)
I encountered a pyth…
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Hi,
The following is the error information with my data.
Error in job parse_orfs while creating output file output/Mabs/Mabs.0.orfs.csv.
RuleException:
CalledProcessError in line 86 of /home/dra…
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Hi @gamcil ,
Clinker helps excellent visualization of gene comparisons. However, I encounter a slight issue when using the Identity/Similarity output. How can I rename the coding sequences back t…