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In SHACL to be fed into FDPs
Matching use cases
1. Transcriptome
2. Variant & clinical information sources HCP, FEGA-Sweden
3. Public resources linkable to genome+clinical information (drugs, pathwa…
mroos updated
5 months ago
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Your package idea seems very good. Is it possible to apply it to multiple samples as well?
In my data, each sample has its own local x and y coordinates. And I have a merged object.
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https://docs.google.com/document/d/1TMMcNiS7_oM9P3FZ0WNYp0aUOjokI3cbRkKeeB9Y_iI/edit
Ontology annotation:
Gene names, cell types, tissues, and diseases.
Experimental assay types (ChIP-seq--antibo…
FuqiX updated
3 years ago
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Link to recipe: https://hackmd.io/@7GH6ArIbRnm_7fgcv8mmWw/HJVQ7nHKL
To do for this recipe:
- [x] finish writing @daniwelter
- [x] test/review recipe (Peter and Rudi)
- [ ] write user story
…
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https://docs.google.com/document/d/1TMMcNiS7_oM9P3FZ0WNYp0aUOjokI3cbRkKeeB9Y_iI/edit
External data and internal data.
Finding the associated datasets/assays/location/accession(e.g. ArrayExpress/…
FuqiX updated
3 years ago
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Hi,
I just updated to 1.1.2 and get the following message:
mc.cores > 1 not supported on windows
I have read that people have managed to get it working with multiple cores on windows 11. Is t…
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Thank you for this great tool and congratulations on the recent Nature publication!! I am wondering if you would recommend using CellOracle for spatially-resolved data, or would that violate any of th…
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PMID: 29980650
Species: Human
Tissue: Kidney
Paper title: Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
Paper link: https://pubmed…
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Figure 1 of SSAM paper
J Park, W Choi, S Tiesmeyer, B Long, LE Borm, E Garren, TN Nguyen, S Codeluppi, M Schlesner, B Tasic, R Eils, N Ishaque. "Segmentation-free inference of cell types from in s…
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Hi Jinmiao,
This is a fantastic and inspiring work for analyzing spatial transcriptomics! Our research group and I would like to use part of your model for academic and research purposes. I am won…