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Dear Mother team,
I am using the classify.seqs command for classify long 16S gene sequenced by nanopore MinION, I am wondering what exactly Needleman-Wunsch was used for alignment, so called ends …
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Hi,
I am trying to write out fastq files generated from a Nanopore MINION machine. There seems to be issues with sequences not being written correctly, sometimes. There definitely appears to b…
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I performed a De novo assembly using PacBio CLR reads with approximately 100 coverage (Genome size: 4.7 Gb).
At that time, the following error occurred.
ERROR: Error running minimap2, terminating. S…
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### Description of the bug
When a medaka model is specified by model name, not path to model file, viralrecon will fail with an error. The error (see below) seems to come from this [line](https://git…
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Hi,
I used Nanoplot for my MinION seq data as follows.
```$ NanoPlot --fastq B01.fq --loglength -t 8 -o B01_np```
Then I got histgrams with minus bars in "weight histogram of read length" and "weig…
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Hello Everyone,
I am currently trying to get remora and the Basecaller Bonito on our HPC. I am using the pip install command but i always get the Error :
############################…
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Hi! I try to correct my nanopore raw data using `Canu 2.2`. The process was running on Ubuntu 20.04.2 LTS.
I use this command to execute :
`canu -correct -d run2 -p trial genomeSize=1k -nanopore-r…
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## Potential Delta (AY.4) and Omicron recombinant
## **Description**
**Sub-lineage of**: AY.4
**Earliest sequence**: 2022-01-17 (France | EPI_ISL_9959921 | EPI_ISL_9879436)
**Most recent …
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Hi! We are using your tool for making metagenomic analysis, and we have run several assemblies with flye, all is working perfectly. Now we decided to do some tests using canu just for comparing canu r…
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Hi,
I want to analyze RNA-seq data from Oxford Nanopore sequencer (minion), and I was trying to generated an index for the human reference genome hg38, which I downloaded the Genome FASTA file from N…