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Hello
@Cecilia-Sensalari
After I try to run, I get an error like this, can you help me?Thank you very much。
`N E X T F L O W ~ version 21.10.6
Launching VIB-PSB/ksrates [nauseous_torricelli] - r…
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Hi
I have come across this issue while running the pipeline:
Error executing process > 'expression_reference_based:tpm_filter'
Caused by:
Process `expression_reference_based:tpm_filter` inpu…
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It appears that the Docker image for QAPA is missing.
The `execution_workflows/QAPA/README.md` of QAPA is describing that the software has to be manually installed.
However, as described in the exe…
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Hi, I'm trying to run amr++ with the RGI option, but am having some problems. When I run the images that don't use RGI (meglab-metagenomics-amrplusplus_v2.img with main_AmrPlusPlus_v2.nf
main_AmrPlu…
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Hello,
I wanted to point out that the function `internet_is_connected()` (from `common/utilities.py` line 430) does not fit our HPC configuration (it always returns **False** because that kind of ope…
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Hello!
I encountered some errors when running companion in my computer. The version of docker image is
`uofgiii/companion latest 0aa29699f086 11 months ago 4.28GB`
1.
```
Erro…
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## Bug report
(Please follow this template replacing the text between parentheses with the requested information)
### Expected behavior and actual behavior
I ran the first example in the nex…
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**What needs to be done:**
Images built under https://github.com/genomic-medicine-sweden/gms-artic/blob/master/scripts/build_singularity_containers.sh should have a fallback to pull them from dockerh…
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## Bug report
Program within the process runs successfully, producing the desired out file in the work directory but Nextflow returns an error and doesn't write to publishDir.
### Expected beha…
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Hi,
I am running:
```
nextflow run ./What_the_Phage-1.0.0/phage.nf -profile slurm,singularity \
--databases --workdir --cachedir ..
```
Versions:
nextflow: 20.07.1
singularity: 3.6
and gett…