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Now that scirpy is part of scverse, we could think of an improved data structure for scAIRR data. See also the discussion at https://github.com/theislab/scanpy/issues/1387.
The challenge with scAI…
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Hi! I'm getting this error message when using this command `RNAalifold --noLP --ribosum_scoring test.txt`
ERROR: Unexpected large magnitude discriminant = -1.08759 0.489399
[test.txt](https://gi…
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hi,
I'm having trouble using tRNAscan-SE.
input: tRNAscan-SE -B -o tRNA.out -f tRNA.ss -m tRNA.stats 001.fasta
error:
tRNAscan-SE v.2.0.9 (July 2021) - scan sequences for transfer RNAs
Copyright …
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I noticed that some of my side chains are out of density after running servalcat when they where in density before (purple):
![grafik](https://user-images.githubusercontent.com/97705752/207636356-483…
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It would great to be able to animate Molecular Beacons, or RNA molecules that fold to form their secondary structures. Would be great to visualize this for sensing applications.
If you could provid…
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Hi all,
Just update the testing result. It seems that new release TIR can close this issue.
1. Please install a new env for the EDTA 20190802 release
2. Follow the step by the Shujun provided.
…
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Completes in about 5-10 seconds
`plot = DMS.plot_arcs(interactions="pairprob", region=[6070,6120], title=False, colorbar=False)`
Completes never (>10mins)
`plot = DMS.plot_arcs(interactions="pair…
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Hello,
Thank you for developing BRIO - the BRIO website is really useful and intuitive.
However, I was wondering if there's a command line or an option to run more than 100 sequences at a time…
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Dear all,
in our last sequencing runs we found several samples with the in the title mentioned frameshift.
The frameshift occurs, because of a deletion of a single or more nucleotides in the reg…