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Hi @KrisKieft,
I'm trying to run some VIBRANT output through vConTACT2 and I'm curious which VIBRANT output to use to generate the gene-to-genome file. I thought I saw a file with the associations …
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I installed mitoz v3.6 using conda. The test run was ok. I wanted to generate mitogenome from a SE data. Below is my command,
```
mitoz all --outprefix PhoSp1_trimmed --clade Arthropoda --genetic_…
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Hi, all! My name is Shaun, and I'm leading project 2 (optimization). I am a bioinformatics PhD student, a developer of Linuxbrew and ABySS, an open-source programmer, an avid traveller, a singer and a…
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Hello! I'm trying to install MetAMOS on my system, but having a bit of trouble. I've run the following commands, which completed without incident:
`python INSTALL.py core`
`python INSTALL.py optio…
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Hi,
I'm trying out FALCON with the E.coli test data but I seem to get a different output -i.e. different size assembly- when compared to the numbers you published on twitter a few days ago (4,631,625b…
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Genome based transcriptome assemblers like Cuflinks produce large no of transfrags. Are these real? if not, they are likely to impair differential expression analysis of isoforms adding more confusion…
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Svaba is awesome! For frozen WGS samples, we got a genome done within 4-5 hours with low CPU/memory footage.
However, as we run tumor-normal pairs on FFPE samples,it is taking extra long time and n…
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How do I make/use a custom DB?
There are some input files that are not specified
% mob_cluster --mode build -f new_plasmids.fasta -p new_plasmids_mobtyper_report.txt -t new_plasmids_host_taxonom…
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This is the code they used in `CAMI II`
```
metaquast -r /path/to/set0-9/ref-genomes \
-t 24 --unique-mapping --no-icarus -o /path/to/output_dir \
-l megahit-103-df,megahit-113-df,megahit…
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Dear developers,
The installation of the tool is quite smooth but the usage is unfortunately still quite problematic.
# 1
the tutorial suggests the user run the following code:
jorg 33 bin1.…