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## Initial Request
### Goal
_Describe what you're trying to accomplish. This is the only necessary step to start this process. The Committee is available to assist with all other steps. Please cle…
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How could we run orthofinder on thousands of genomes?
One strategy might be to use 1) the -op option on the query genomes to generate orthofinder compatible names. 2) Then run diamond blast separa…
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I was having this issue with nanopolish and was pointed to the fact that it does not support r10 flow cells. I then tried f5c. The output here is a little more verbose, but I am still ending up with t…
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Dear linnabrown,
Thank you for developing such a good software. I have encountered some result files that were generated during the use process. However, I am uncertain about the exact meaning and …
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Hi,
First, thank you for gapseq, it is really useful.
I have a small issue with options given to the sub command `doall` of `gapseq` on Ubuntu 22.04.
When calling `./gapseq -v`, I have an exp…
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### What happened?
demo Workflow has terminated but no outputs are available
### Operating System
Windows 10
### Workflow Execution
EPI2ME Labs desktop application
### Workflow Execution - EPI2M…
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Dear MashMap team,
The bottom-k sketch used in both MashMap2 and MashMap3, it's time complexity is still O(d*k), where d is the number of elements in set while k is the number of MinHashes or hash …
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Would you be interested in creating an Arthrobacter model? ;-)
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Issue description:
I'm running Bactopia to analyze some bacterial genomes and encountered an issue while setting up the AMRFinder+ database. I've installed AMRFinder+ version 3.10.45 and curl versi…
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Hi
I'm trying to extract all bacterial reads from a paired-end kraken analysis but I am getting an error when the script tries to parse the kraken.report.txt. I'm running under most recent version …