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Dear Gviz authors,
I have been working on a large locus plot using Gviz and wanted to reduce the number of yTicks to make the plot more comprehensible.
I was able to set the yTicks using `yTi…
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Currently the variant peptides with fusion are labeled as `FUSION-:-:`, which causes a problem to `filterFasta`. In `filterFasta` we take a gene expression table, which has the abundance of each trans…
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Dear Eduardo,
Thank you so much for this extremely useful program, SUPPA2.
I have been running your program on my RNA-seq dataset (2 conditions in triplicates) for the analysis of alternative spli…
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**Describe the bug**
ProgressReportNumber in the Milestone Tracker is not showing milestones 3 and above for some studies.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to projectLive-…
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* spladder version: v2.4.2
* Python version: Python 3.8.5
* Operating System: Linux version 4.19.128-microsoft-standard (oe-user@oe-host) (gcc version 8.2.0 (GCC))
* Machine Configuration: 16 Cores…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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Hello,
I have been working on mapping some targeted nanopore cDNA sequencing. We have generated reads for a one gene with two primer sets, one set are in the 5` and 3` UTRs and effectively capture t…
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Dear SUPPA developers,
first of all: thanks a lot for providing your nice tool set!
I have one feature suggestion though:
Since you have now included a script for the differential analysis of s…
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Hi there, thanks for the awesome STARsolo tool and the recently released improvements!
The read structure for 10X Genomics 5' gene expression libraries is such that both Read 1 and Read 2 carry cDN…
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https://mp.weixin.qq.com/s/vDPc8tsPcEy5b3j-cPLtIQ
ixxmu updated
2 years ago