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## Expected Behavior
I thought mmseqs would be quite quick to annotate a single MAG
## Current Behavior
I am using the SemiBin GTDB database for mmseqs (https://zenodo.org/record/4751564/files/GT…
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Hi,
When running `mikado serialise` with BLAST tsv results I get error: `Cannot use a compiled regex as replacement pattern with regex=False`
Serialise log:
```
2024-06-13 09:30:05,071 - seria…
jolbi updated
4 months ago
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Hi ALex
I have retrieved the fasta sequences from a bed file using the bedtools (without specifying the strand information), and then I treated each sequence as a gene and combined it with a human r…
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```
What steps will reproduce the problem?
1. Try a nucleic sequence
2. I've already searched for "libdg.so" and that's what I get:
/usr/lib/i386-linux-gnu/libdg.so.2
/usr/lib/x86_64-linux-gnu/libdg.s…
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### Description
1. delete CTS_ARGS from design/mock-array/config.mk
2. build
3. as good results in CTS as with tweaked CTS_ARGS
Without tweaks the macros in mock-array get more skew:
From g…
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## The need
When using `anvi-script-visualize-split-coverages` I realised I'd like to visualise differential coverage for individual genes or operons across samples. This is especially useful for m…
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Hello!
I am using `sqm_annot.pl` (modified as per your suggestion in the clossed-issue #540) to annotate a file with ~40 million predicted ORFs. The script repeatedly crashed, saying error running …
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Right now the curated GPI file for SARS-CoV-2 proteins and cleavage products lives here:
https://github.com/Knowledge-Graph-Hub/kg-covid-19/tree/master/curated/ORFs
We should consider moving this…
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I find out that the --un flag will affect the performance of `hisat2`.
For example, in `hisat2ORF`, I run both
```
hisat2 -p 8 -k 2 --no-spliced-alignment --rna-strandness F --no-unal --un unalign…