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### Context
I was trying to test my fix for a different bug and tried smashing https://www.refine.bio/experiments/SRP066781/single-cell-indexed-rna-seq-of-human-hematopoietic-stem-and-progenitors.
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Hi @UCDNJJ ,
Regarding the cell type annotation table, I have two questions:
(1). In table "HMBA_Human_BG_annotation", you only provided marker genes for the level 4 cluster (Group). The marker ge…
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Hello, very useful tool!
I learned the SenCID following the demo/SenCID_tutorial.ipynb. When I ran it more than one times, I can't get the consistant AUC values.
I seted adata.obs['condition'] as th…
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Hi,
I am trying to run CellChat on a single nuclei RNAseq dataset from the turquoise killifish. I basically followed the steps given in the [previous version of CellChat,](https://github.com/sqjin/…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hi,
Thank you for providing this software. I have some questions about its usage that I was hoping you might be able to answer.
1. In the tutorial, bdat_initial is the gene x sample matrix for…
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Hi there,
I've been trying to use this software to analyze single-cell RNA-seq data. I was able to successfully run the STAR Index generation, and starseqr.py does not appear to crash but is taking…
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- Link to publication: https://www.biorxiv.org/content/10.1101/2021.06.04.447088v1
- Title of publication: Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression…
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Hi,
We have a ATAC/RNA-seq pair-end reads for the input. What kind of options should we be using for the mapping part? What should we expect for the output?
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Project UUID: c4077b3c-5c98-4d26-a614-246d12c2e5d7
Project Title: Ischaemic sensitivity of human tissue by single cell RNA seq
Project Short Name: TissueStability
Submission UUID: fd52efcc-6…