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Good morning,
Our team is currently working to add Pelops to our bioinformatics pipeline. Specifically, we would like to use it within an internally developed tool that currently accepts VCFs and a…
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Hello everyone!
It's been a while since the last survey, and I could really use some feedback from everyone! To help with this I've put together the [2024 Bactopia Usage Survey](https://forms.gle/B…
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GDC: https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/DNA_Seq_Variant_Calling_Pipeline/
- features we'd like to support: snv, indel, structural variants, extra chromosomal dna
- create ta…
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### Description of the bug
The pipeline appears to have a bug in the follow-up process. When executing the nextflow pipeline, the terminal behaves as if the process has stopped and overlaps the proce…
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**New term details**
```
Term name - Denoising approach
Structured comment name - denoising_appr
Definition - Tool and parameters used to denoise sequence reads.
Expected value - algorithm name, …
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When a group wants to include their pipeline in PHA4GE, they must create a PR requesting the review of their pipeline by the working group. For these PRs there will be a checklist template where the g…
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```
http://bcbio.wordpress.com/2013/05/22/scaling-variant-detection-pipelines-for-wh
ole-genome-sequencing-analysis/
```
Original issue reported on code.google.com by `geo...@marsel.is` on 28 May 2…
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I had recently did a Nanopore sequencing run for SARS-CoV-2 in MinION with midnight primers 1200 bp amplicons (Nikki Freed protocol) and native barcoding kit (EXP-NBD96). I have earlier used EPI2ME pi…
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Hi,
I'm trying to install Taiji from the source code in our CentOS server using stack and I'm getting requested to give my github credentials during the installation:
```
[gascui@login02 Taij…
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### What's the use case?
Running each op of a Dagster job in its own ECS task (similar to the k8s_job_executor) to make it easier to horizontally scale jobs with many ops, and give better isolation b…