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### Description of the bug
I have problems using MHCquant with multiple variable modifications.
The whole pipeline works when not specifying any modifciations.
With multiple modifcations, the pip…
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Here is the error i get while trying to run DeepLC
2024-03-28 17:20:01 - INFO - Using DeepLC version 2.2.27
Traceback (most recent call last):
File "deeplc\gui.py", line 38, in
File "gooey\py…
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> Hi Ralf,
>
> I tried the new features today and they seem to work. However, when I set more than one cpu in the config file, the process seems to get stuck in the multiprocessing step at the very…
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The GCA with canonical = GCA proteins + GRCh38 is under development here https://github.com/bigbio/pgt-pangenome/blob/main/gca_canonical_validation.ipynb, these are the following tasks that notebook s…
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Hi and thank you for the great package!
`pip install deeplc` behaves strangely on Python 3.10. It downloads mutltiple versions of deeplc:
```
pip install deeplc
Collecting deeplc
Downloadin…
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Hi,
Thanks for the great software. I am trying to convert a Mus musculus Uniprot/SwissProt FASTA to a spectral library using fasta2speclib. I am on a Threadripper 5995WX with 512GB of RAM. This …
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- For fraggraph we need to get the positions of the modifications from the peptidoform string
- E.g. `get_modification_positions("ARTKQTARKSTGGKAPRKQLATKAARKSAPAT[-79.966331]GGV[+79.966331]KKPHRYRPGT…
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### Description of the bug
Hi,
I got an error in the first step, 'profile test'. Here is the relevant report. Maybe there is something wrong with my singularity.
### Command used and termin…
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Hello,
likely it is something minor, but I simply don't know how to solve it:
I get this error:
```python
MS²Rescore (v3.0.0b5)
Developed at CompOmics, VIB / Ghent University, Belgium.
Ple…
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![image](https://github.com/compomics/DeepLC/assets/61624696/76f656a7-549e-48ee-ac46-4a2b18d8c161)
Hello!
I have a list of modified peptides in the 'ModifiedPeptides' column above. I would like…